4Y7N: The Structure Insight into 5-Carboxycytosine Recognition by RNA Polymerase II during Transcription Elongation

PDB ID: 4Y7NDownload
MMDB ID: 130952
PDB Deposition Date: 2015/2/15
Updated in MMDB: 2023/10
Experimental Method:
x-ray diffraction
Resolution: 3.3  Å
Source Organism:
Saccharomyces cerevisiae S288C▼
Similar Structures:
Biological Unit for 4Y7N: tridecameric; determined by author
Molecular Components in 4Y7N
Label Count Molecule
Proteins (10 molecules)
1
DNA-directed RNA Polymerase II Subunit Rpb1
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit Rpb2,dna-directed RNA Polymerase II Subunit Rpb2
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit Rpb3
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc1
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc2
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc3
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit Rpb9
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc5
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit Rpb11
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc4
Molecule annotation
Nucleotides(3 molecules)
1
DNA (29-mer)
Molecule annotation
1
DNA (5'-d(*cp*tp*gp*cp*tp*tp*ap*tp*cp*gp*gp*tp*ap*g)-3')
Molecule annotation
1
RNA (5'-d(*ap*up*gp*gp*ap*gp*ap*gp*g)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (11 molecules)
1
8
ZINC IONZINC ION
2
2
MAGNESIUM IONMAGNESIUM ION
3
1
PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTERPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303