NCBI
National Center for
Biotechnology Information
Search
4Y5F:
PAS-GAF fragment from Deinococcus radiodurans BphP assembled with BV - Y307S, high dose
PDB ID:
4Y5F
Download
MMDB ID:
129490
PDB Deposition Date:
2015/2/11
Updated in MMDB:
2019/12
Experimental Method:
x-ray diffraction
Resolution:
1.7 Å
Source Organism:
Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539
Similar Structures:
VAST+
Download sequence data
Biological Unit for 4Y5F: monomeric; determined by author
Molecular Components in 4Y5F
Label
Count
Molecule
Protein (1 molecule)
A
1
Bacteriophytochrome
(Gene symbol:
DR_A0050
)
Chemical and Non-standard biopolymers (1 molecule)
1
1
3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303