4Y3O: Crystal structure of Ribosomal oxygenase NO66 in complex with substrate Rpl8 peptide and Ni(II) and cofactor N-oxalyglycine

PDB ID: 4Y3ODownload
MMDB ID: 150310
PDB Deposition Date: 2015/2/10
Updated in MMDB: 2017/05
Experimental Method:
x-ray diffraction
Resolution: 2.2  Å
Source Organism:
Similar Structures:
Biological Unit for 4Y3O: tetrameric; determined by author and by software (PISA)
Molecular Components in 4Y3O
Label Count Molecule
Proteins (4 molecules)
2
Bifunctional Lysine-specific Demethylase and Histidyl-hydroxylase No66
(Gene symbol: RIOX1)
Molecule annotation
2
Rpl8 Peptide
Molecule annotation
Chemicals and Non-standard biopolymers (8 molecules)
1
2
NICKEL (II) IONNICKEL (II) ION
2
2
N-OXALYLGLYCINEN-OXALYLGLYCINE
3
3
GLYCEROLGLYCEROL
4
1
ACETATE IONACETATE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303