4XD1: X-ray Structure Of The N-formyltransferase Qdtf From Providencia Alcalifaciens, W305a Mutant, In The Presence Of Tdp-qui3n And N5-thf

PDB ID: 4XD1Download
MMDB ID: 126366
PDB Deposition Date: 2014/12/18
Updated in MMDB: 2015/02
Experimental Method:
x-ray diffraction
Resolution: 1.5  Å
Source Organism:
Similar Structures:
Biological Unit for 4XD1: monomeric; determined by author
Molecular Components in 4XD1
Label Count Molecule
Protein (1 molecule)
1
Tdp-3-aminoquinovose-n-formyltransferase
Molecule annotation
Chemicals and Non-standard biopolymers (14 molecules)
1
1
N-{[4-({[(6r)-2-Amino-5-Formyl-4-Oxo-1,4,5,6,7,8-Hexahydropteridin-6-Yl]methyl}amino)phenyl]carbonyl}-L-Glutamic AcidN-{[4-({[(6r)-2-Amino-5-Formyl-4-Oxo-1,4,5,6,7,8-Hexahydropteridin-6-Yl]methyl}amino)phenyl]carbonyl}-L-Glutamic Acid
2
1
[(3r,4s,5s,6r)-4-Amino-3,5-Dihydroxy-6-Methyloxan-2-Yl][hydroxy-[[(2r,3s,5r)-3-Hydroxy-5-(5-Methyl-2,4-Dioxopyrimidin-1-Yl)oxolan-2-Yl]methoxy]phosphoryl]hydrogen Phosphate[(3r,4s,5s,6r)-4-Amino-3,5-Dihydroxy-6-Methyloxan-2-Yl][hydroxy-[[(2r,3s,5r)-3-Hydroxy-5-(5-Methyl-2,4-Dioxopyrimidin-1-Yl)oxolan-2-Yl]methoxy]phosphoryl]hydrogen Phosphate
3
4
Sodium IonSodium Ion
4
5
1,2-Ethanediol1,2-Ethanediol
5
3
Chloride IonChloride Ion
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303