4XD1: X-ray structure of the N-formyltransferase QdtF from Providencia alcalifaciens, W305A mutant, in the presence of TDP-Qui3N and N5-THF

PDB ID: 4XD1Download
MMDB ID: 126366
PDB Deposition Date: 2014/12/18
Updated in MMDB: 2023/09
Experimental Method:
x-ray diffraction
Resolution: 1.5  Å
Source Organism:
Similar Structures:
Biological Unit for 4XD1: dimeric; determined by author
Molecular Components in 4XD1
Label Count Molecule
Proteins (2 molecules)
2
Tdp-3-aminoquinovose-n-formyltransferase
Molecule annotation
Chemicals and Non-standard biopolymers (28 molecules)
1
2
N-{[4-({[(6R)-2-amino-5-formyl-4-oxo-1,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)phenyl]carbonyl}-L-glutamic acid (Link to PubChem not yet available)N-{[4-({[(6R)-2-amino-5-formyl-4-oxo-1,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)phenyl]carbonyl}-L-glutamic acid
2
2
[(3R,4S,5S,6R)-4-amino-3,5-dihydroxy-6-methyloxan-2-yl][hydroxy-[[(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy]phosphoryl] hydrogen phosphate (Link to PubChem not yet available)[(3R,4S,5S,6R)-4-amino-3,5-dihydroxy-6-methyloxan-2-yl][hydroxy-[[(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy]phosphoryl] hydrogen phosphate
3
8
SODIUM ION (Link to PubChem not yet available)SODIUM ION
4
10
1,2-ETHANEDIOL (Link to PubChem not yet available)1,2-ETHANEDIOL
5
6
CHLORIDE ION (Link to PubChem not yet available)CHLORIDE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303