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4XD1:
X-ray structure of the N-formyltransferase QdtF from Providencia alcalifaciens, W305A mutant, in the presence of TDP-Qui3N and N5-THF
PDB ID:
4XD1
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MMDB ID:
126366
PDB Deposition Date:
2014/12/18
Updated in MMDB:
2023/10
Experimental Method:
x-ray diffraction
Resolution:
1.5 Å
Source Organism:
Providencia alcalifaciens
Similar Structures:
VAST+
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Biological Unit for 4XD1: dimeric; determined by author
Molecular Components in 4XD1
Label
Count
Molecule
Proteins (2 molecules)
A
A_1
2
Tdp-3-aminoquinovose-n-formyltransferase
Chemicals and Non-standard biopolymers (28 molecules)
1
2
N-{[4-({[(6R)-2-amino-5-formyl-4-oxo-1,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)phenyl]carbonyl}-L-glutamic acid
2
2
[(3R,4S,5S,6R)-4-amino-3,5-dihydroxy-6-methyloxan-2-yl][hydroxy-[[(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy]phosphoryl] hydrogen phosphate
3
8
SODIUM ION
4
10
1,2-ETHANEDIOL
5
6
CHLORIDE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303