4XA5: Crystal structure of the pre-catalytic ternary complex of DNA polymerase lambda with a templating A and an incoming 8-oxo-dGTP

PDB ID: 4XA5Download
MMDB ID: 136336
PDB Deposition Date: 2014/12/12
Updated in MMDB: 2024/12
Experimental Method:
x-ray diffraction
Resolution: 1.9  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 4XA5: tetrameric; determined by author and by software (PISA)
Molecular Components in 4XA5
Label Count Molecule
Protein (1 molecule)
1
DNA Polymerase Lambda
Molecule annotation
Nucleotides(3 molecules)
1
Downstream Primer DNA (5'-d(p*gp*cp*cp*g)-3')
Molecule annotation
1
Primer DNA (5'-d(*cp*ap*gp*tp*ap*(doc))-3')
Molecule annotation
1
Template DNA (5'-d(*cp*gp*gp*cp*ap*gp*tp*ap*cp*tp*g)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (8 molecules)
1
1
8-OXO-2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE8-OXO-2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE
2
2
MAGNESIUM IONMAGNESIUM ION
3
3
ACETATE IONACETATE ION
4
2
GLYCEROLGLYCEROL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303