4X5V: Crystal structure of the post-catalytic nick complex of DNA polymerase lambda with a templating A and incorporated 8-oxo-dGMP

PDB ID: 4X5VDownload
MMDB ID: 133646
PDB Deposition Date: 2014/12/5
Updated in MMDB: 2015/10
Experimental Method:
x-ray diffraction
Resolution: 2.15  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 4X5V: tetrameric; determined by author and by software (PISA)
Molecular Components in 4X5V
Label Count Molecule
Protein (1 molecule)
1
DNA Polymerase Lambda
Molecule annotation
Nucleotides(3 molecules)
1
DNA (5'-d(p*gp*cp*cp*g)-3')
Molecule annotation
1
DNA (5'-d(*cp*ap*gp*tp*ap*cp*(8og))-3')
Molecule annotation
1
DNA (5'-d(*cp*gp*gp*cp*ap*gp*tp*ap*cp*tp*g)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (3 molecules)
1
1
SODIUM IONSODIUM ION
2
1
MAGNESIUM IONMAGNESIUM ION
3
1
CITRIC ACIDCITRIC ACID
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303