4W92: Crystal structure of Bacillus subtilis cyclic-di-AMP riboswitch ydaO

PDB ID: 4W92Download
MMDB ID: 124221
PDB Deposition Date: 2014/8/26
Updated in MMDB: 2017/12
Experimental Method:
x-ray diffraction
Resolution: 3.209  Å
Source Organism:
Homo sapiens▼
Similar Structures:
Biological Unit for 4W92: dimeric; determined by author and by software (PISA)
Molecular Components in 4W92
Label Count Molecule
Protein (1 molecule)
1
U1 Small Nuclear Ribonucleoprotein a
Molecule annotation
Nucleotide(1 molecule)
1
C-di-amp Ribsoswitch
Molecule annotation
Chemicals and Non-standard biopolymers (9 molecules)
1
5
MAGNESIUM IONMAGNESIUM ION
2
1
POTASSIUM IONPOTASSIUM ION
3
1
1,2-ETHANEDIOL1,2-ETHANEDIOL
4
2
(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303