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4V1O:
Architecture Of The Rna Polymerase Ii-mediator Core Transcription Initiation Complex
PDB ID:
4V1O
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MMDB ID:
126746
PDB Deposition Date:
2014/9/29
Updated in MMDB:
2017/09
Experimental Method:
electron microscopy
Resolution:
9.7 Å
Source Organism:
Saccharomyces mikatae
▼
Taxonomy
Molecule
Saccharomyces mikatae
Q
synthetic construct
N, P, T
Saccharomyces cerevisiae
A, B, C, D, E, F, G, H, I, J, K, L,
M, O, R, S, U, V, W, X, Y, Z
Similar Structures:
VAST+
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Biological Unit for 4V1O: 26-meric; determined by author
Molecular Components in 4V1O
Label
Count
Molecule
Proteins (23 molecules)
A
1
DNA-directed RNA Polymerase II Subunit Rpb1
B
1
DNA-directed RNA Polymerase II Subunit Rpb2
C
1
DNA-directed RNA Polymerase II Subunit Rpb3
D
1
DNA-directed RNA Polymerase II Subunit Rpb4
E
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc 1
F
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc 2
G
1
DNA-directed RNA Polymerase II Subunit Rpb7
H
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc 3
I
1
DNA-directed RNA Polymerase II Subunit Rpb9
J
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc 5
K
1
DNA-directed RNA Polymerase II Subunit Rpb11
L
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc 4
M
1
Transcription Initiation Factor IIB
O
1
Tata-box-binding Protein
Q
1
Transcription Initiation Factor IIF Subunit Alpha
R
1
Transcription Initiation Factor IIF Subunit Beta
S
1
Mediator of RNA Polymerase II Transcription Subunit 6
U
1
Mediator of RNA Polymerase II Transcription Subunit 8
V
1
Mediator of RNA Polymerase II Transcription Subunit 20
W
1
Mediator of RNA Polymerase II Transcription Subunit 11
X
1
Mediator of RNA Polymerase II Transcription Subunit 18
Y
1
Mediator of RNA Polymerase II Transcription Subunit 20
Z
1
Mediator of RNA Polymerase II Transcription Subunit 22
Nucleotides(3 molecules)
N
1
Nontemplate DNA
P
1
RNA
T
1
Template DNA
Chemicals and Non-standard biopolymers (10 molecules)
1
9
Zinc Ion
2
1
Magnesium Ion
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303