4UHD: Structural Studies Of A Thermophilic Esterase From Thermogutta Terrifontis (acetate Bound)

Citation:
Abstract
Thermogutta terrifontis esterase (TtEst), a carboxyl esterase identified in the novel thermophilic bacterium T. terrifontis from the phylum Planctomycetes, has been cloned and over-expressed in Escherichia coli. The enzyme has been characterized biochemically and shown to have activity towards small p-nitrophenyl (pNP) carboxylic esters, with optimal activity for pNP-propionate. The enzyme retained 95% activity after incubation for 1 h at 80 degrees C. The crystal structures of the native TtEst and its complexes with the substrate analogue d-malate and the product acetate have been determined to high resolution. The bound ligands have allowed the identification of the carboxyl and alcohol binding pockets in the enzyme active site. Comparison of TtEst with structurally related enzymes provides insight into how differences in their catalytic activity can be rationalized based upon the properties of the amino acid residues in their active site pockets. The mutant enzymes L37A and L251A have been constructed to extend the substrate range of TtEst towards the larger butyrate and valerate pNP-esters. These mutant enzymes have also shown a significant increase in activity towards acetate and propionate pNP esters. A crystal structure of the L37A mutant was determined with the butyrate product bound in the carboxyl pocket of the active site. The mutant structure shows an expansion of the pocket that binds the substrate carboxyl group, which is consistent with the observed increase in activity towards pNP-butyrate. DATABASE: The GenBank sequence accession number for the Thermogutta terrifontis esterase is KR002593. The protein structures for T. terrifontis esterase and their complexes have been deposited in the Protein Data Bank with codes: 4UHC (native), 4UHD (acetate bound), 4UHE (malate bound) and 4UHF (L37A mutant with butyrate bound).
PDB ID: 4UHDDownload
MMDB ID: 129920
PDB Deposition Date: 2015/3/24
Updated in MMDB: 2015/08
Experimental Method:
x-ray diffraction
Resolution: 1.07  Å
Source Organism:
Similar Structures:
Biological Unit for 4UHD: monomeric; determined by author and by software (PISA)
Molecular Components in 4UHD
Label Count Molecule
Protein (1 molecule)
1
Esterase
Molecule annotation
Chemicals (6 molecules)
1
1
2
1
3
2
4
2
* Click molecule labels to explore molecular sequence information.

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