4UB5: DNA polymerase beta substrate complex with a templating cytosine, incoming 8-oxodGTP, and Mn2+, 5 s

PDB ID: 4UB5Download
MMDB ID: 124732
PDB Deposition Date: 2014/8/11
Updated in MMDB: 2019/12
Experimental Method:
x-ray diffraction
Resolution: 2.15  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 4UB5: tetrameric; determined by author and by software (PISA)
Molecular Components in 4UB5
Label Count Molecule
Protein (1 molecule)
1
DNA Polymerase Beta
Molecule annotation
Nucleotides(3 molecules)
1
5'-d(*cp*cp*gp*ap*cp*cp*gp*cp*gp*cp*ap*tp*cp*ap*gp*c)-3'
Molecule annotation
1
5'-d(*gp*cp*tp*gp*ap*tp*gp*cp*gp*c)-3'
Molecule annotation
1
5'-d(p*gp*tp*cp*gp*g)-3'
Molecule annotation
Chemicals and Non-standard biopolymers (8 molecules)
1
5
MANGANESE (II) ION (Link to PubChem not yet available)MANGANESE (II) ION
2
1
8-OXO-2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE (Link to PubChem not yet available)8-OXO-2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE
3
2
SODIUM ION (Link to PubChem not yet available)SODIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303