4U9I: High Resolution Structure Of The Ni-R State Of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F

PDB ID: 4U9IDownload
MMDB ID: 126334
PDB Deposition Date: 2014/8/6
Updated in MMDB: 2023/12
Experimental Method:
x-ray diffraction
Resolution: 1.06  Å
Source Organism:
Similar Structures:
Biological Unit for 4U9I: dimeric; determined by author and by software (PISA)
Molecular Components in 4U9I
Label Count Molecule
Proteins (2 molecules)
1
Periplasmic [nife] Hydrogenase Small Subunit
Molecule annotation
1
Periplasmic [nife] Hydrogenase Large Subunit
Molecule annotation
Chemicals and Non-standard biopolymers (14 molecules)
1
2
IRON/SULFUR CLUSTERIRON/SULFUR CLUSTER
2
1
FE3-S4 CLUSTERFE3-S4 CLUSTER
3
8
(4S)-2-METHYL-2,4-PENTANEDIOL(4S)-2-METHYL-2,4-PENTANEDIOL
4
1
hydrido[hydridonickel(2+)]bis(hydrocyanato-1kappaC)(hydroxymethyl)ironhydrido[hydridonickel(2+)]bis(hydrocyanato-1kappaC)(hydroxymethyl)iron
5
1
MAGNESIUM IONMAGNESIUM ION
6
1
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303