4U7C: Structure of DNA polymerase kappa in complex with benzopyrene adducted DNA

PDB ID: 4U7CDownload
MMDB ID: 135896
PDB Deposition Date: 2014/7/30
Updated in MMDB: 2023/10
Experimental Method:
x-ray diffraction
Resolution: 2.8  Å
Source Organism:
unidentified▼
Similar Structures:
Biological Unit for 4U7C: hexameric; determined by author and by software (PISA)
Molecular Components in 4U7C
Label Count Molecule
Proteins (2 molecules)
2
DNA Polymerase Kappa
Molecule annotation
Nucleotides(4 molecules)
2
DNA (5'-d(p*gp*cp*gp*gp*ap*tp*cp*ap*g)-3')
Molecule annotation
2
DNA (5'-d(*p*ap*tp*gp*(vkj)p*cp*tp*gp*ap*tp*cp*cp*gp*c)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (8 molecules)
1
2
MAGNESIUM IONMAGNESIUM ION
2
2
2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine
3
3
DI(HYDROXYETHYL)ETHERDI(HYDROXYETHYL)ETHER
4
1
1,2-ETHANEDIOL1,2-ETHANEDIOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303