NCBI
National Center for
Biotechnology Information
Search
4RT2:
Ternary complex crystal structure of DNA polymerase Beta with (alpha,beta)-CH2-(beta,gamma)-NH-dTTP
PDB ID:
4RT2
Download
MMDB ID:
130472
PDB Deposition Date:
2014/11/12
Updated in MMDB:
2017/12
Experimental Method:
x-ray diffraction
Resolution:
1.92 Å
Source Organism:
synthetic construct
▼
Taxonomy
Molecule
synthetic construct
T, P, D
Homo sapiens
A
Similar Structures:
VAST+
Download sequence data
Biological Unit for 4RT2: tetrameric; determined by author and by software (PISA)
Molecular Components in 4RT2
Label
Count
Molecule
Protein (1 molecule)
A
1
DNA Polymerase Beta
Nucleotides(3 molecules)
T
1
DNA (5'-d(*cp*cp*gp*ap*cp*ap*gp*cp*gp*cp*ap*tp*cp*ap*gp*c)-3')
P
1
DNA (5'-d(*gp*cp*tp*gp*ap*tp*gp*cp*gp*(doc))-3')
D
1
DNA (5'-d(p*gp*tp*cp*gp*g)-3')
Chemicals and Non-standard biopolymers (6 molecules)
1
1
MAGNESIUM ION
2
3
SODIUM ION
3
1
CHLORIDE ION
4
1
2'-deoxy-5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonoamino)phosphoryl]methyl}phosphoryl]-3,4-dihydrothymidine
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303