4RQ8: Human DNA Polymerase Beta With Gapped DNA Containing an 8-oxo-7,8-dihydro-Guanine(8-oxoG) and dATP soaked with MnCl2 for 35 s

PDB ID: 4RQ8Download
MMDB ID: 128603
PDB Deposition Date: 2014/10/31
Updated in MMDB: 2015/05
Experimental Method:
x-ray diffraction
Resolution: 2  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 4RQ8: tetrameric; determined by author and by software (PISA)
Molecular Components in 4RQ8
Label Count Molecule
Protein (1 molecule)
1
DNA Polymerase Beta
Molecule annotation
Nucleotides(3 molecules)
1
DNA (5'-d(p*gp*tp*cp*gp*g)-3')
Molecule annotation
1
DNA (5'-d(*gp*cp*tp*gp*ap*tp*gp*cp*gp*cp*a)-3')
Molecule annotation
1
DNA (5'-d(*cp*cp*gp*ap*cp*(8og)p*gp*cp*gp*cp*ap*tp*cp*ap*gp*c)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (28 molecules)
1
1
PYROPHOSPHATEPYROPHOSPHATE
2
6
MANGANESE (II) IONMANGANESE (II) ION
3
9
SODIUM IONSODIUM ION
4
6
CHLORIDE IONCHLORIDE ION
5
6
ACETATE IONACETATE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303