4RPY: Human Dna Polymerase Beta With Gapped Dna Containing An 8-oxo-7,8- Dihydro-guanine(8-oxog) And Dctp Soaked With Mgcl2 For 30 S

PDB ID: 4RPYDownload
MMDB ID: 128593
PDB Deposition Date: 2014/10/31
Updated in MMDB: 2015/05
Experimental Method:
x-ray diffraction
Resolution: 1.9  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 4RPY: tetrameric; determined by author and by software (PISA)
Molecular Components in 4RPY
Label Count Molecule
Protein (1 molecule)
1
DNA Polymerase Beta
Molecule annotation
Nucleotides(3 molecules)
1
DNA (5'-d(p*gp*tp*cp*gp*g)-3')
Molecule annotation
1
DNA (5'-d(*gp*cp*tp*gp*ap*tp*gp*cp*gp*cp*c)-3')
Molecule annotation
1
DNA (5'-d(*cp*cp*gp*ap*cp*(8og) P*gp*cp*gp*cp*ap*tp*cp*ap*gp*c)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (19 molecules)
1
3
Magnesium IonMagnesium Ion
2
7
Sodium IonSodium Ion
3
4
Chloride IonChloride Ion
4
2
Acetate IonAcetate Ion
5
1
PyrophosphatePyrophosphate
6
2
2'-Deoxycytidine-5'-Triphosphate2'-Deoxycytidine-5'-Triphosphate
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303