4RBM: Porphyromonas gingivalis gingipain K (Kgp) catalytic and immunoglobulin superfamily-like domains

PDB ID: 4RBMDownload
MMDB ID: 123680
PDB Deposition Date: 2014/9/12
Updated in MMDB: 2017/12
Experimental Method:
x-ray diffraction
Resolution: 1.75  Å
Source Organism:
Similar Structures:
Biological Unit for 4RBM: monomeric; determined by author and by software (PISA)
Molecular Components in 4RBM
Label Count Molecule
Protein (1 molecule)
1
Lys-gingipain W83
Molecule annotation
Chemicals and Non-standard biopolymers (17 molecules)
1
2
CALCIUM IONCALCIUM ION
2
3
SODIUM IONSODIUM ION
3
1
NICKEL (II) IONNICKEL (II) ION
4
1
HISTIDINEHISTIDINE
5
2
ACETATE IONACETATE ION
6
3
AZIDE IONAZIDE ION
7
4
GLYCEROLGLYCEROL
8
1
(3S)-3,7-diaminoheptan-2-one(3S)-3,7-diaminoheptan-2-one
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303