National Center for
Biotechnology Information

4RB9: Crystal Structure Of The Thermus Thermophilus 70s Ribosome In Complex With Pactamycin (soaked), Mrna And Three Deacylated Trnas In The A, P And E Sites

MMDB ID:

123983

PDB Deposition Date:

2014/9/12

Updated in MMDB:

2014/10

Experimental Method:

x-ray diffraction

Resolution:

2.55 Å

Source Organism:

Thermus thermophilus HB8▼

Taxonomy	Molecule
Thermus thermophilus HB8	4RB9A, 4RB9B, 4RB9C, 4RB9D, 4RB9E, 4 RB9F, 4RB9G, 4RB9H, 4RB9I, 4RB9J , 4RB9K, 4RB9L, 4RB9M, 4RB9N, 4R B9O, 4RB9P, 4RB9Q, 4RB9R, 4RB9S, 4RB9T, 4RB9U, 4RBAA, 4RBAB, 4RB AD, 4RBAE, 4RBAF, 4RBAG, 4RBAH, 4RBAI, 4RBAN, 4RBAO, 4RBAP, 4RBA Q, 4RBAR, 4RBAS, 4RBAT, 4RBAU, 4 RBAV, 4RBAW, 4RBAX, 4RBAY, 4RBAZ , 4RBA0, 4RBA1, 4RBA2, 4RBA3, 4R BA4, 4RBA5, 4RBA6, 4RBA7, 4RBA8, 4RBA9, 4RBBA, 4RBBB, 4RBBC, 4RB BD, 4RBBE, 4RBBF, 4RBBG, 4RBBH, 4RBBI, 4RBBJ, 4RBBK, 4RBBL, 4RBB M, 4RBBN, 4RBBO, 4RBBP, 4RBBQ, 4 RBBR, 4RBBS, 4RBBT, 4RBBU, 4RBCA , 4RBCB, 4RBCD, 4RBCE, 4RBCF, 4R BCG, 4RBCH, 4RBCI, 4RBCN, 4RBCO, 4RBCP, 4RBCQ, 4RBCR, 4RBCS, 4RB CT, 4RBCU, 4RBCV, 4RBCW, 4RBCX, 4RBCY, 4RBCZ, 4RBC0, 4RBC1, 4RBC 2, 4RBC3, 4RBC4, 4RBC5, 4RBC6, 4 RBC7, 4RBC8, 4RBC9
synthetic construct	4RB9V, 4RBBV
Escherichia coli	4RB9X, 4RBBX
Unassigned	4RB9W, 4RB9Y, 4RBBW, 4RBBY

Similar Structures:

Merged PDB IDs:4RB9 4RBA 4RBB 4RBC

Asymmetric Unit for 4RB9: 112-meric

Molecular Components in 4RB9
Label	Count	Molecule
Proteins (98 molecules)
4RB9B 4RBBB	2	30S Ribosomal Protein S2
4RB9C 4RBBC	2	30S Ribosomal Protein S3
4RB9D 4RBBD	2	30S Ribosomal Protein S4
4RB9E 4RBBE	2	30S Ribosomal Protein S5
4RB9F 4RBBF	2	30S Ribosomal Protein S6
4RB9G 4RBBG	2	30S Ribosomal Protein S7
4RB9H 4RBBH	2	30S Ribosomal Protein S8
4RB9I 4RBBI	2	30S Ribosomal Protein S9
4RB9J 4RBBJ	2	30S Ribosomal Protein S10
4RB9K 4RBBK	2	30S Ribosomal Protein S11
4RB9L 4RBBL	2	30S Ribosomal Protein S12
4RB9M 4RBBM	2	30S Ribosomal Protein S13
4RB9N 4RBBN	2	30S Ribosomal Protein S14
4RB9O 4RBBO	2	30S Ribosomal Protein S15
4RB9P 4RBBP	2	30S Ribosomal Protein S16
4RB9Q 4RBBQ	2	30S Ribosomal Protein S17
4RB9R 4RBBR	2	30S Ribosomal Protein S18
4RB9S 4RBBS	2	30S Ribosomal Protein S19
4RB9T 4RBBT	2	30S Ribosomal Protein S20
4RB9U 4RBBU	2	30S Ribosomal Protein THX
4RBAD 4RBCD	2	50S Ribosomal Protein L2
4RBAE 4RBCE	2	50S Ribosomal Protein L3
4RBAF 4RBCF	2	50S Ribosomal Protein L4
4RBAG 4RBCG	2	50S Ribosomal Protein L5
4RBAH 4RBCH	2	50S Ribosomal Protein L6
4RBAI 4RBCI	2	50S Ribosomal Protein L9
4RBAN 4RBCN	2	50S Ribosomal Protein L13
4RBAO 4RBCO	2	50S Ribosomal Protein L14
4RBAP 4RBCP	2	50S Ribosomal Protein L15
4RBAQ 4RBCQ	2	50S Ribosomal Protein L16
4RBAR 4RBCR	2	50S Ribosomal Protein L17
4RBAS 4RBCS	2	50S Ribosomal Protein L18
4RBAT 4RBCT	2	50S Ribosomal Protein L19
4RBAU 4RBCU	2	50S Ribosomal Protein L20
4RBAV 4RBCV	2	50S Ribosomal Protein L21
4RBAW 4RBCW	2	50S Ribosomal Protein L22
4RBAX 4RBCX	2	50S Ribosomal Protein L23
4RBAY 4RBCY	2	50S Ribosomal Protein L24
4RBAZ 4RBCZ	2	50S Ribosomal Protein L25
4RBA0 4RBC0	2	50S Ribosomal Protein L27
4RBA1 4RBC1	2	50S Ribosomal Protein L28
4RBA2 4RBC2	2	50S Ribosomal Protein L29
4RBA3 4RBC3	2	50S Ribosomal Protein L30
4RBA4 4RBC4	2	50S Ribosomal Protein L31
4RBA5 4RBC5	2	50S Ribosomal Protein L32
4RBA6 4RBC6	2	50S Ribosomal Protein L33
4RBA7 4RBC7	2	50S Ribosomal Protein L34
4RBA8 4RBC8	2	50S Ribosomal Protein L35
4RBA9 4RBC9	2	50S Ribosomal Protein L36
Nucleotides(14 molecules)
4RB9A 4RBBA	2	16S Ribosomal RNA
4RB9V 4RBBV	2	mRNA
4RB9W 4RB9Y 4RBBW 4RBBY	4	A/p-site tRNA
4RB9X 4RBBX	2	E-site tRNA
4RBAA 4RBCA	2	23S Ribosomal RNA
4RBAB 4RBCB	2	5S Ribosomal RNA
Chemicals and Non-standard biopolymers (2152 molecules)
1	2134	Magnesium Ion
2	2	Pactamycin
3	2	IronSULFUR CLUSTER
4	12	Zinc Ion
5	2	Potassium Ion

* Click molecule labels to explore molecular sequence information.

Citing MMDB

Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303