4PH5: Structure of human DNA polymerase beta complexed with a nicked DNA containing a AC at N-1 position and GC at N position

PDB ID: 4PH5Download
MMDB ID: 129026
PDB Deposition Date: 2014/5/4
Updated in MMDB: 2023/12
Experimental Method:
x-ray diffraction
Resolution: 2.55  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 4PH5: tetrameric; determined by author and by software (PISA)
Molecular Components in 4PH5
Label Count Molecule
Protein (1 molecule)
1
DNA Polymerase Beta
Molecule annotation
Nucleotides(3 molecules)
1
DNA (5'-d(*cp*cp*gp*ap*cp*gp*ap*cp*gp*cp*ap*tp*cp*ap*gp*c)-3')
Molecule annotation
1
DNA (5'-d(*gp*cp*tp*gp*ap*tp*gp*cp*gp*cp*c)-3')
Molecule annotation
1
DNA (5'-d(p*gp*tp*cp*gp*g)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (5 molecules)
1
2
MAGNESIUM IONMAGNESIUM ION
2
2
SODIUM IONSODIUM ION
3
1
PHOSPHATE IONPHOSPHATE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303