4OW6: Crystal Structure Of Diphtheria Toxin At Acidic Ph

Diphtheria toxin (DT), the etiological agent of the homonymous disease, like other bacterial toxins, has to undergo a dramatic structural change in order to be internalized into the cytosol, where it finally performs its function. The molecular mechanism of toxin transit across the membrane is not well known, but the available experimental evidence indicates that one of the three domains of the toxin, called the central alpha-helical domain, inserts into the lipid bilayer, so favoring the translocation of the catalytic domain. This process is driven by the acidic pH of the endosomal lumen. Here, we describe the crystal structure of DT grown at acidic pH in the presence of bicelles. We were unable to freeze the moment of DT insertion into the lipid bilayer, but our crystal structure indicates that the low pH causes the unfolding of the TH2, TH3 and TH4 alpha-helices. This event gives rise to the exposure of a hydrophobic surface that includes the TH5 and TH8 alpha-helices, and the loop region connecting the TH8 and TH9 alpha-helices. Their exposure is probably favored by the presence of lipid bilayers in the crystallization solution, and they appear to be ready to insert into the membrane. DATABASE: Coordinates and structure factors have been deposited in the Protein Data Bank under accession number 4OW6.
PDB ID: 4OW6Download
MMDB ID: 118884
PDB Deposition Date: 2014/1/28
Updated in MMDB: 2014/04
Experimental Method:
x-ray diffraction
Resolution: 2.8  Å
Source Organism:
Similar Structures:
Biological Unit for 4OW6: monomeric; determined by author and by software (PISA)
Molecular Components in 4OW6
Label Count Molecule
Protein (1 molecule)
Diphtheria Toxin
Molecule annotation
* Click molecule labels to explore molecular sequence information.

Citing MMDB