4OE7: Crystal structure of YagE, a KDG aldolase protein, in complex with aldol condensed product of pyruvate and glyoxal

PDB ID: 4OE7Download
MMDB ID: 150263
PDB Deposition Date: 2014/1/12
Updated in MMDB: 2017/12
Experimental Method:
x-ray diffraction
Resolution: 1.99  Å
Source Organism:
Similar Structures:
Biological Unit for 4OE7: tetrameric; determined by author and by software (PISA)
Molecular Components in 4OE7
Label Count Molecule
Proteins (4 molecules)
4
Probable 2-keto-3-deoxy-galactonate Aldolase Yage
(Gene symbol: yagE)
Molecule annotation
Chemicals and Non-standard biopolymers (43 molecules)
1
27
1,2-ETHANEDIOL1,2-ETHANEDIOL
2
5
GLYCEROLGLYCEROL
3
4
MAGNESIUM IONMAGNESIUM ION
4
1
ethanedialethanedial
5
2
PYRUVIC ACIDPYRUVIC ACID
6
2
(4S)-4-hydroxy-2,5-dioxopentanoic acid(4S)-4-hydroxy-2,5-dioxopentanoic acid
7
2
(4R)-4-hydroxy-2,5-dioxopentanoic acid(4R)-4-hydroxy-2,5-dioxopentanoic acid
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303