4NMN: Aquifex Aeolicus Replicative Helicase (dnab) Complexed With Adp, At 3.3 Resolution

Citation:
Abstract
Cellular replication forks are powered by ring-shaped, hexameric helicases that encircle and unwind DNA. To better understand the molecular mechanisms and control of these enzymes, we used multiple methods to investigate the bacterial replicative helicase, DnaB. A 3.3 A crystal structure of Aquifex aeolicus DnaB, complexed with nucleotide, reveals a newly discovered conformational state for this motor protein. Electron microscopy and small angle X-ray scattering studies confirm the state seen crystallographically, showing that the DnaB ATPase domains and an associated N-terminal collar transition between two physical states in a nucleotide-dependent manner. Mutant helicases locked in either collar state are active but display different capacities to support critical activities such as duplex translocation and primase-dependent RNA synthesis. Our findings establish the DnaB collar as an autoregulatory hub that controls the ability of the helicase to transition between different functional states in response to both nucleotide and replication initiation/elongation factors.
PDB ID: 4NMNDownload
MMDB ID: 117093
PDB Deposition Date: 2013/11/15
Updated in MMDB: 2014/01
Experimental Method:
x-ray diffraction
Resolution: 3.3  Å
Source Organism:
Similar Structures:
Biological Unit for 4NMN: hexameric; determined by author and by software (PISA)
Molecular Components in 4NMN
Label Count Molecule
Proteins (6 molecules)
6
Replicative DNA Helicase
Molecule annotation
Chemicals (15 molecules)
1
6
2
6
3
3
* Click molecule labels to explore molecular sequence information.

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