4LKF: Crystal Structure Of Pseudomonas Aeruginosa Lectin Leca Complexed With Gala-wky At 1.64 A Resolution

Citation:
Abstract
The galactopeptide dendrimer GalAG2 ((beta-Gal-OC6 H4 CO-Lys-Pro-Leu)4 (Lys-Phe-Lys-Ile)2 Lys-His-Ile-NH2 ) binds strongly to the Pseudomonas aeruginosa (PA) lectin LecA, and it inhibits PA biofilms, as well as disperses already established ones. By starting with the crystal structure of the terminal tripeptide moiety GalA-KPL in complex with LecA, a computational mutagenesis study was carried out on the galactotripeptide to optimize the peptide-lectin interactions. 25 mutants were experimentally evaluated by a hemagglutination inhibition assay, 17 by isothermal titration calorimetry, and 3 by X-ray crystallography. Two of these tripeptides, GalA-KPY (dissociation constant (KD )=2.7 muM) and GalA-KRL (KD =2.7 muM), are among the most potent monovalent LecA ligands reported to date. Dendrimers based on these tripeptide ligands showed improved PA biofilm inhibition and dispersal compared to those of GalAG2, particularly G2KPY ((beta-Gal-OC6 H4 CO-Lys-Pro-Tyr)4 (Lys-Phe-Lys-Ile)2 Lys-His-Ile-NH2 ). The possibility to retain and even improve the biofilm inhibition in several analogues of GalAG2 suggests that it should be possible to fine-tune this dendrimer towards therapeutic use by adjusting the pharmacokinetic parameters in addition to the biofilm inhibition through amino acid substitutions.
PDB ID: 4LKFDownload
MMDB ID: 116063
PDB Deposition Date: 2013/7/7
Updated in MMDB: 2013/12
Experimental Method:
x-ray diffraction
Resolution: 1.64  Å
Source Organism:
synthetic construct
Similar Structures:
Biological Unit for 4LKF: tetrameric; determined by author
Molecular Components in 4LKF
Label Count Molecule
Proteins (4 molecules)
2
Pa-i Galactophilic Lectin(Gene symbol: lecA)
Molecule annotation
2
Peptide Wkyl
Molecule annotation
Chemicals (6 molecules)
1
2
2
2
3
2
* Click molecule labels to explore molecular sequence information.

Citing MMDB
.