4JVA: Crystal Structure Of Riibeta(108-402) Bound To He33, A N6 Di-propyl Substituted Camp Analog

Citation:
Abstract
Cyclic AMP (cAMP) is a ubiquitous second messenger that regulates many proteins, most notably cAMP-dependent protein kinase (PKA). PKA holoenzymes (comprised of two catalytic (C) and two regulatory (R) subunits) regulate a wide variety of cellular processes, and its functional diversity is amplified by the presence of four R-subunit isoforms, RIalpha, RIbeta, RIIalpha, and RIIbeta. Although these isoforms all respond to cAMP, they are functionally nonredundant and exhibit different biochemical properties. In order to understand the functional differences between these isoforms, we screened cAMP derivatives for their ability to selectively activate RI and RII PKA holoenzymes using a fluorescence anisotropy assay. Our results indicate that RIalpha holoenzymes are selectively activated by C8-substituted analogs and RIIbeta holoenzymes by N6-substituted analogs, where HE33 is the most prominent RII activator. We also solved the crystal structures of both RIalpha and RIIbeta bound to HE33. The RIIbeta structure shows the bulky aliphatic substituent of HE33 is fully encompassed by a pocket comprising of hydrophobic residues. RIalpha lacks this hydrophobic lining in Domain A, and the side chains are displaced to accommodate the HE33 dipropyl groups. Comparison between cAMP-bound structures reveals that RIIbeta, but not RIalpha, contains a cavity near the N6 site. This study suggests that the selective activation of RII over RI isoforms by N6 analogs is driven by the spatial and chemical constraints of Domain A and paves the way for the development of potent noncyclic nucleotide activators to specifically target PKA iso-holoenyzmes.
PDB ID: 4JVADownload
MMDB ID: 113563
PDB Deposition Date: 2013/3/25
Updated in MMDB: 2013/10
Experimental Method:
x-ray diffraction
Resolution: 2.5  Å
Source Organism:
Similar Structures:
Biological Unit for 4JVA: monomeric; determined by author and by software (PISA)
Molecular Components in 4JVA
Label Count Molecule
Protein (1 molecule)
1
Camp-dependent Protein Kinase Type Ii-beta Regulatory Subunit(Gene symbol: Prkar2b)
Molecule annotation
Chemicals (2 molecules)
1
2
* Click molecule labels to explore molecular sequence information.

Citing MMDB
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