4GFH: Topoisomerase II-DNA-AMPPNP complex

PDB ID: 4GFHDownload
MMDB ID: 178097
PDB Deposition Date: 2012/8/3
Updated in MMDB: 2024/11
Experimental Method:
x-ray diffraction
Resolution: 4.408  Å
Source Organism:
Saccharomyces cerevisiae S288C▼
Similar Structures:
Biological Unit for 4GFH: decameric; determined by author
Molecular Components in 4GFH
Label Count Molecule
Proteins (2 molecules)
2
DNA Topoisomerase 2
Molecule annotation
Nucleotides(8 molecules)
2
DNA (5'-d(p*cp*cp*tp*ap*cp*tp*gp*cp*tp*ap*c)-3')
Molecule annotation
2
DNA (5'-d(*cp*gp*cp*gp*gp*tp*ap*gp*cp*ap*gp*tp*ap*gp*g)-3')
Molecule annotation
2
DNA (5'-d(p*gp*gp*ap*tp*gp*ap*cp*gp*ap*tp*(tsp))-3')
Molecule annotation
2
DNA (5'-d(*cp*gp*cp*gp*ap*ap*tp*cp*gp*tp*cp*ap*tp*cp*c)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (4 molecules)
1
2
MAGNESIUM ION (Link to PubChem not yet available)MAGNESIUM ION
2
2
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER (Link to PubChem not yet available)PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303