4FGY: Identification of a unique PPAR ligand with an unexpected binding mode and antibetic activity

AIMS/HYPOTHESIS: Existing thiazolidinedione (TZD) drugs for diabetes have severe side effects. The aim of this study is to develop alternative peroxisome proliferator-activated receptor gamma (PPARgamma) ligands that retain the benefits in improving insulin resistance but with reduced side effects. METHODS: We used AlphaScreen assay to screen for new PPARgamma ligands from compound libraries. In vitro biochemical binding affinity assay and in vivo cell-based reporter assay were used to validate ionomycin as a partial ligand of PPARgamma. A mouse model of diabetes was used to assess the effects of ionomycin in improving insulin sensitivity. Crystal structure of PPARgamma complexed with ionomycin revealed the unique binding mode of ionomycin, which elucidated the molecular mechanisms allowing the discrimination of ionomycin from TZDs. RESULTS: We found that the antibiotic ionomycin is a novel modulating ligand for PPARgamma. Both the transactivation and binding activity of PPARgamma by ionomycin can be blocked by PPARgamma specific antagonist GW9662. Ionomycin interacts with the PPARgamma ligand-binding domain in a unique binding mode with properties and epitopes distinct from those of TZD drugs. Ionomycin treatment effectively improved hyperglycaemia and insulin resistance, but had reduced side effects compared with TZDs in the mouse model of diabetes. In addition, ionomycin effectively blocked the phosphorylation of PPARgamma at Ser273 by cyclin-dependent kinase 5 both in vitro and in vivo. CONCLUSIONS/INTERPRETATION: Our studies suggest that ionomycin may represent a unique template for designing novel PPARgamma ligands with advantages over current TZD drugs.
PDB ID: 4FGYDownload
MMDB ID: 108433
PDB Deposition Date: 2012/6/5
Updated in MMDB: 2018/05
Experimental Method:
x-ray diffraction
Resolution: 2.84  Å
Source Organism:
Homo sapiens
Similar Structures:
Biological Unit for 4FGY: dimeric; determined by author and by software (PISA)
Molecular Components in 4FGY
Label Count Molecule
Proteins (2 molecules)
Peroxisome Proliferator-activated Receptor Gamma(Gene symbol: PPARG)
Molecule annotation
Nuclear Receptor Coactivator 1(Gene symbol: NCOA1)
Molecule annotation
Chemical (1 molecule)
* Click molecule labels to explore molecular sequence information.

Citing MMDB