4ELM: Crystal structure of the mouse CD1d-lysosulfatide-Hy19.3 TCR complex

PDB ID: 4ELMDownload
MMDB ID: 101496
PDB Deposition Date: 2012/4/11
Updated in MMDB: 2023/12
Experimental Method:
x-ray diffraction
Resolution: 3.48  Å
Source Organism:
Similar Structures:
Biological Unit for 4ELM: tetrameric; determined by author and by software (PISA)
Molecular Components in 4ELM
Label Count Molecule
Proteins (4 molecules)
1
Antigen-presenting Glycoprotein Cd1d1
(Gene symbol: Cd1d1)
Molecule annotation
1
Beta-2 Microglobulin
(Gene symbol: B2m)
Molecule annotation
1
Hy19.3 TCR Alpha Chain (Mouse Variable Domain, Human Constant Domain)
Molecule annotation
1
Hy19.3 TCR Beta Chain (Mouse Variable Domain, Human Constant Domain)
Molecule annotation
Chemicals and Non-standard biopolymers (10 molecules)
1
6
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
1
beta-D-mannopyranosebeta-D-mannopyranose
3
1
alpha-L-fucopyranosealpha-L-fucopyranose
4
1
(2S,3R,4E)-2-amino-3-hydroxyoctadec-4-en-1-yl 3-O-sulfo-beta-D-galactopyranoside(2S,3R,4E)-2-amino-3-hydroxyoctadec-4-en-1-yl 3-O-sulfo-beta-D-galactopyranoside
5
1
PALMITIC ACIDPALMITIC ACID
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303