4E0L: Fyllyyt Segment From Human Beta 2 Microglobulin (62-68) Displayed On 54-membered Macrocycle Scaffold

Citation:
Abstract
Although aberrant protein aggregation has been conclusively linked to dozens of devastating amyloid diseases, scientists remain puzzled about the molecular features that render amyloid fibrils or small oligomers toxic. Here, we report a previously unobserved type of amyloid fibril that tests as cytotoxic: one in which the strands of the contributing beta-sheets are out of register. In all amyloid fibrils previously characterized at the molecular level, only in-register beta-sheets have been observed, in which each strand makes its full complement of hydrogen bonds with the strands above and below it in the fibril. In out-of-register sheets, strands are sheared relative to one another, leaving dangling hydrogen bonds. Based on this finding, we designed out-of-register beta-sheet amyloid mimics, which form both cylindrin-like oligomers and fibrils, and these mimics are cytotoxic. Structural and energetic considerations suggest that out-of-register fibrils can readily convert to toxic cylindrins. We propose that out-of-register beta-sheets and their related cylindrins are part of a toxic amyloid pathway, which is distinct from the more energetically favored in-register amyloid pathway.
PDB ID: 4E0LDownload
MMDB ID: 105919
PDB Deposition Date: 2012/3/4
Updated in MMDB: 2012/12
Experimental Method:
x-ray diffraction
Resolution: 1.7  Å
Similar Structures:
Biological Unit for 4E0L: dimeric; determined by software (PISA)
Molecular Components in 4E0L
Label Count Molecule
Proteins (2 molecules)
2
Cyclic Pseudo-peptide Fyllyyt(orn)kn(hao)sa(orn)
Molecule annotation
Chemical (1 molecule)
1
1
* Click molecule labels to explore molecular sequence information.

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