4DQQ: Ternary complex of Bacillus DNA Polymerase I Large Fragment E658A, DNA duplex, and rCTP (paired with dG of template) in presence of Mg2+

PDB ID: 4DQQDownload
MMDB ID: 100332
PDB Deposition Date: 2012/2/16
Updated in MMDB: 2012/12
Experimental Method:
x-ray diffraction
Resolution: 1.595  Å
Source Organism:
Geobacillus kaustophilus HTA426▼
Similar Structures:
Biological Unit for 4DQQ: trimeric; determined by author and by software (PISA)
Molecular Components in 4DQQ
Label Count Molecule
Protein (1 molecule)
1
DNA Polymerase
Molecule annotation
Nucleotides(2 molecules)
1
DNA (5'-d(*cp*cp*tp*gp*ap*cp*tp*cp*(doc))-3')
Molecule annotation
1
DNA (5'-d(*cp*ap*tp*gp*gp*gp*ap*gp*tp*cp*ap*gp*g)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (5 molecules)
1
1
CYTIDINE-5'-TRIPHOSPHATECYTIDINE-5'-TRIPHOSPHATE
2
1
SULFATE IONSULFATE ION
3
2
(4S)-2-METHYL-2,4-PENTANEDIOL(4S)-2-METHYL-2,4-PENTANEDIOL
4
1
2-(N-MORPHOLINO)-ETHANESULFONIC ACID2-(N-MORPHOLINO)-ETHANESULFONIC ACID
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303