4DOB: Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-monochlororomethylene triphosphate: Stereoselective binding of R-isomer

PDB ID: 4DOBDownload
MMDB ID: 100518
PDB Deposition Date: 2012/2/9
Updated in MMDB: 2023/09
Experimental Method:
x-ray diffraction
Resolution: 2.05  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 4DOB: tetrameric; determined by author and by software (PISA)
Molecular Components in 4DOB
Label Count Molecule
Protein (1 molecule)
1
DNA Polymerase Beta
Molecule annotation
Nucleotides(3 molecules)
1
C C G a C C G C G C a T C a G C
Molecule annotation
1
G C T G a T G C G (Doc)
Molecule annotation
1
G T C G G
Molecule annotation
Chemicals and Non-standard biopolymers (10 molecules)
1
1
MAGNESIUM IONMAGNESIUM ION
2
3
SODIUM IONSODIUM ION
3
5
CHLORIDE IONCHLORIDE ION
4
1
5'-O-[(R)-{[(R)-[(R)-chloro(phosphono)methyl](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]-2'-deoxyguanosine5'-O-[(R)-{[(R)-[(R)-chloro(phosphono)methyl](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]-2'-deoxyguanosine
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303