4DKQ: Crystal structure of clade A/E 93TH057 HIV-1 gp120 core in complex with DMJ-I-228

PDB ID: 4DKQDownload
MMDB ID: 99245
PDB Deposition Date: 2012/2/3
Updated in MMDB: 2023/12
Experimental Method:
x-ray diffraction
Resolution: 1.888  Å
Source Organism:
Similar Structures:
Biological Unit for 4DKQ: monomeric; determined by author and by software (PISA)
Molecular Components in 4DKQ
Label Count Molecule
Protein (1 molecule)
1
Clade A/E 93th057 Hiv-1 Gp120 Core
Molecule annotation
Chemicals and Non-standard biopolymers (13 molecules)
1
11
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
1
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
3
1
N-[(1S,2S)-2-carbamimidamido-2,3-dihydro-1H-inden-1-yl]-N'-(4-chloro-3-fluorophenyl)ethanediamideN-[(1S,2S)-2-carbamimidamido-2,3-dihydro-1H-inden-1-yl]-N'-(4-chloro-3-fluorophenyl)ethanediamide
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303