4DFM: Crystal structure of the large fragment of DNA polymerase I from Thermus aquaticus in ternary complex with 5-(aminopentinyl)-2-dCTP

PDB ID: 4DFMDownload
MMDB ID: 99720
PDB Deposition Date: 2012/1/24
Updated in MMDB: 2023/09
Experimental Method:
x-ray diffraction
Resolution: 1.886  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 4DFM: trimeric; determined by author and by software (PISA)
Molecular Components in 4DFM
Label Count Molecule
Protein (1 molecule)
1
DNA Polymerase I, Thermostable
Molecule annotation
Nucleotides(2 molecules)
1
5'-d(gaccacggcgc Ddg)-3'
Molecule annotation
1
5'-d(aaagcgcgccgtggtc)-3'
Molecule annotation
Chemicals and Non-standard biopolymers (11 molecules)
1
1
5-(5-aminopent-1-yn-1-yl)-2'-deoxycytidine 5'-(tetrahydrogen triphosphate)5-(5-aminopent-1-yn-1-yl)-2'-deoxycytidine 5'-(tetrahydrogen triphosphate)
2
4
MAGNESIUM IONMAGNESIUM ION
3
1
FORMIC ACIDFORMIC ACID
4
5
1,2-ETHANEDIOL1,2-ETHANEDIOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303