4DFK: large fragment of DNA Polymerase I from Thermus aquaticus in a closed ternary complex with 5-(N-(10-hydroxydecanoyl)-aminopentinyl)-2-dUTP

PDB ID: 4DFKDownload
MMDB ID: 99719
PDB Deposition Date: 2012/1/24
Updated in MMDB: 2023/09
Experimental Method:
x-ray diffraction
Resolution: 1.647  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 4DFK: trimeric; determined by author and by software (PISA)
Molecular Components in 4DFK
Label Count Molecule
Protein (1 molecule)
1
DNA Polymerase I, Thermostable
Molecule annotation
Nucleotides(2 molecules)
1
5'-d(gaccacggcgc Doc)-3'
Molecule annotation
1
5'-d(aaaaggcgccgtggtc)-3'
Molecule annotation
Chemicals and Non-standard biopolymers (15 molecules)
1
1
2'-deoxy-5-{5-[(10-hydroxydecanoyl)amino]pent-1-yn-1-yl}uridine 5'-(tetrahydrogen triphosphate)2'-deoxy-5-{5-[(10-hydroxydecanoyl)amino]pent-1-yn-1-yl}uridine 5'-(tetrahydrogen triphosphate)
2
6
MAGNESIUM IONMAGNESIUM ION
3
3
1,2-ETHANEDIOL1,2-ETHANEDIOL
4
5
FORMIC ACIDFORMIC ACID
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303