4DFJ: Crystal structure of the large fragment of DNA Polymerase I from Thermus aquaticus in a closed ternary complex with 5-(aminopentinyl)-dTTP

PDB ID: 4DFJDownload
MMDB ID: 99718
PDB Deposition Date: 2012/1/23
Updated in MMDB: 2023/09
Experimental Method:
x-ray diffraction
Resolution: 1.9  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 4DFJ: trimeric; determined by author
Molecular Components in 4DFJ
Label Count Molecule
Protein (1 molecule)
1
DNA Polymerase I, Thermostable
Molecule annotation
Nucleotides(2 molecules)
1
5'-d(gaccacggcgc Doc)-3'
Molecule annotation
1
5'-d(aaaaggcgccgtggtc)-3'
Molecule annotation
Chemicals and Non-standard biopolymers (20 molecules)
1
8
MAGNESIUM IONMAGNESIUM ION
2
1
5-(5-aminopent-1-yn-1-yl)-2'-deoxyuridine 5'-(tetrahydrogen triphosphate)5-(5-aminopent-1-yn-1-yl)-2'-deoxyuridine 5'-(tetrahydrogen triphosphate)
3
6
FORMIC ACIDFORMIC ACID
4
4
1,2-ETHANEDIOL1,2-ETHANEDIOL
5
1
CHLORIDE IONCHLORIDE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303