4D9B: Pyridoxamine 5' phosphate (PMP) bound form of Salmonella typhimurium D-Cysteine desulfhydrase obtained after co-crystallization with D-cycloserine

PDB ID: 4D9BDownload
MMDB ID: 100119
PDB Deposition Date: 2012/1/11
Updated in MMDB: 2023/11
Experimental Method:
x-ray diffraction
Resolution: 1.67  Å
Source Organism:
Similar Structures:
Biological Unit for 4D9B: dimeric; determined by author and by software (PISA)
Molecular Components in 4D9B
Label Count Molecule
Proteins (2 molecules)
2
D-cysteine Desulfhydrase
(Gene symbol: yedO)
Molecule annotation
Chemicals and Non-standard biopolymers (8 molecules)
1
2
BENZAMIDINEBENZAMIDINE
2
2
4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE
3
4
1,2-ETHANEDIOL1,2-ETHANEDIOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303