4D6R: crystal structure of human JMJD2D in complex with N-OXALYLGLYCINE and bound o-toluenesulfonamide

PDB ID: 4D6RDownload
MMDB ID: 150240
PDB Deposition Date: 2014/11/14
Updated in MMDB: 2024/05
Experimental Method:
x-ray diffraction
Resolution: 1.398  Å
Source Organism:
Similar Structures:
Biological Unit for 4D6R: dimeric; determined by author and by software (PISA)
Molecular Components in 4D6R
Label Count Molecule
Proteins (2 molecules)
2
Lysine-specific Demethylase 4D
(Gene symbol: KDM4D)
Molecule annotation
Chemicals and Non-standard biopolymers (20 molecules)
1
2
ZINC IONZINC ION
2
2
NICKEL (II) IONNICKEL (II) ION
3
8
1,2-ETHANEDIOL1,2-ETHANEDIOL
4
2
N-OXALYLGLYCINEN-OXALYLGLYCINE
5
6
O-TOLUENESULFONAMIDEO-TOLUENESULFONAMIDE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303