4D6N: THE CRYSTAL STRUCTURE OF I-DMOI IN COMPLEX WITH ITS TARGET DNA AT 10 DAYS INCUBATION IN 5MM MG (STATE 7)

PDB ID: 4D6NDownload
MMDB ID: 154012
PDB Deposition Date: 2014/11/13
Updated in MMDB: 2023/12
Experimental Method:
x-ray diffraction
Resolution: 2.35  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 4D6N: pentameric; determined by author and by software (PISA)
Molecular Components in 4D6N
Label Count Molecule
Protein (1 molecule)
1
Homing Endonuclease I-dmoi
Molecule annotation
Nucleotides(4 molecules)
1
5'-d(*dgp*cp*cp*tp*tp*gp*cp*cp*gp*gp*gp*tp*ap*dap)-3'
Molecule annotation
1
5'-d(*dgp*tp*tp*cp*cp*gp*gp*cp*gp*cp*gp)-3'
Molecule annotation
1
5'-d(*dcp*gp*cp*gp*cp*cp*gp*gp*ap*ap*cp*tp*tp*dap*c)-3'
Molecule annotation
1
5'-d(*dcp*cp*gp*gp*cp*ap*ap*gp*gp*cp)-3'
Molecule annotation
Chemicals and Non-standard biopolymers (2 molecules)
1
2
MAGNESIUM IONMAGNESIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303