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4D5L: Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

PDB ID:	4D5L Download
MMDB ID:	126608
PDB Deposition Date:	2014/11/5
Updated in MMDB:	2022/11
Experimental Method:	electron microscopy
Resolution:	9 Å
Source Organism:	Oryctolagus cuniculus
Similar Structures:

Biological Unit for 4D5L: 34-meric; determined by author

Molecular Components in 4D5L
Label	Count	Molecule
Proteins (33 molecules)
A	1	40S Ribosomal Protein Es26
B	1	40S Ribosomal Protein Es27
C	1	40S Ribosomal Protein Es28
D	1	40S Ribosomal Protein Us14
E	1	40S Ribosomal Protein Es30
F	1	40S Ribosomal Protein Es31
G	1	40S Ribosomal Protein Rack1
H	1	40S Ribosomal Protein ES7
I	1	40S Ribosomal Protein ES8
J	1	40S Ribosomal Protein US4
K	1	40S Ribosomal Protein Es10
L	1	40S Ribosomal Protein Us17
M	1	40S Ribosomal Protein Es12
N	1	40S Ribosomal Protein Us15
O	1	40S Ribosomal Protein Us11
P	1	40S Ribosomal Protein Us19
Q	1	40S Ribosomal Protein US9
R	1	40S Ribosomal Protein Es17
S	1	40S Ribosomal Protein Us13
T	1	40S Ribosomal Protein Es19
U	1	40S Ribosomal Protein Us10
V	1	40S Ribosomal Protein Es21
W	1	40S Ribosomal Protein US8
X	1	40S Ribosomal Protein Us12
Y	1	40S Ribosomal Protein Es24
Z	1	40S Ribosomal Protein Es25
a	1	40S Ribosomal Protein US2
b	1	40S Ribosomal Protein ES1
c	1	40S Ribosomal Protein US5
d	1	40S Ribosomal Protein US3
e	1	40S Ribosomal Protein ES4
f	1	40S Ribosomal Protein US7
g	1	40S Ribosomal Protein ES6
Nucleotide(1 molecule)
1	1	18S rRNA 2

* Click molecule labels to explore molecular sequence information.

Citing MMDB

Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303