3ZE6: 3D structure of the Ni-Fe-Se hydrogenase from D. vulgaris Hildenborough in the as-isolated oxidized state at 1.50 Angstroms

PDB ID: 3ZE6Download
MMDB ID: 174772
PDB Deposition Date: 2012/12/3
Updated in MMDB: 2020/06
Experimental Method:
x-ray diffraction
Resolution: 1.5  Å
Source Organism:
Similar Structures:
Biological Unit for 3ZE6: dimeric; determined by author and by software (PISA)
Molecular Components in 3ZE6
Label Count Molecule
Proteins (2 molecules)
1
Periplasmic [nifese] Hydrogenase, Small Subunit
Molecule annotation
1
Periplasmic [nifese] Hydrogenase, Large Subunit, Selenocys Selenocysteine-containing
Molecule annotation
Chemicals and Non-standard biopolymers (14 molecules)
1
3
IRON/SULFUR CLUSTERIRON/SULFUR CLUSTER
2
1
BIS-(MU-2-OXO),[(MU-3--SULFIDO)-BIS(MU-2--SULFIDO)-TRIS(CYS-S)-TRI-IRON] (AQUA)(GLU-O)IRON(II)BIS-(MU-2-OXO),[(MU-3--SULFIDO)-BIS(MU-2--SULFIDO)-TRIS(CYS-S)-TRI-IRON] (AQUA)(GLU-O)IRON(II)
3
5
3-[DODECYL(DIMETHYL)AMMONIO]PROPANE-1-SULFONATE3-[DODECYL(DIMETHYL)AMMONIO]PROPANE-1-SULFONATE
4
1
CARBONMONOXIDE-(DICYANO) IRONCARBONMONOXIDE-(DICYANO) IRON
5
1
NICKEL (II) IONNICKEL (II) ION
6
1
FE (II) IONFE (II) ION
7
1
CHLORIDE IONCHLORIDE ION
8
1
GLYCEROLGLYCEROL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303