3WV3: Crystal structure of the catalytic domain of MMP-13 complexed with N-(3-methoxybenzyl)-4-oxo-3,4-dihydrothieno[2,3-d]pyrimidine-2-carboxamide

PDB ID: 3WV3Download
MMDB ID: 123332
PDB Deposition Date: 2014/5/12
Updated in MMDB: 2017/12
Experimental Method:
x-ray diffraction
Resolution: 1.6  Å
Source Organism:
Similar Structures:
Biological Unit for 3WV3: monomeric; determined by author
Molecular Components in 3WV3
Label Count Molecule
Protein (1 molecule)
1
Collagenase 3
(Gene symbol: MMP13)
Molecule annotation
Chemicals and Non-standard biopolymers (8 molecules)
1
2
ZINC ION (Link to PubChem not yet available)ZINC ION
2
2
CALCIUM ION (Link to PubChem not yet available)CALCIUM ION
3
1
SODIUM ION (Link to PubChem not yet available)SODIUM ION
4
1
FORMIC ACID (Link to PubChem not yet available)FORMIC ACID
5
1
1,2-ETHANEDIOL (Link to PubChem not yet available)1,2-ETHANEDIOL
6
1
N-(3-methoxybenzyl)-4-oxo-3,4-dihydrothieno[2,3-d]pyrimidine-2-carboxamide (Link to PubChem not yet available)N-(3-methoxybenzyl)-4-oxo-3,4-dihydrothieno[2,3-d]pyrimidine-2-carboxamide
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303