3VM6: Crystal structure of ribose-1,5-bisphosphate isomerase from Thermococcus kodakarensis KOD1 in complex with alpha-D-ribose-1,5-bisphosphate

PDB ID: 3VM6Download
MMDB ID: 99025
PDB Deposition Date: 2011/12/8
Updated in MMDB: 2023/11
Experimental Method:
x-ray diffraction
Resolution: 2.85  Å
Source Organism:
Similar Structures:
Biological Unit for 3VM6: hexameric; determined by author and by software (PISA)
Molecular Components in 3VM6
Label Count Molecule
Proteins (6 molecules)
6
Translation Initiation Factor Eif-2b, Delta Subunit
(Gene symbol: TK_RS00910)
Molecule annotation
Chemicals and Non-standard biopolymers (38 molecules)
1
6
1,5-di-O-phosphono-alpha-D-ribofuranose1,5-di-O-phosphono-alpha-D-ribofuranose
2
20
DI(HYDROXYETHYL)ETHERDI(HYDROXYETHYL)ETHER
3
6
CHLORIDE IONCHLORIDE ION
4
4
MAGNESIUM IONMAGNESIUM ION
5
2
TETRAETHYLENE GLYCOLTETRAETHYLENE GLYCOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303