3U8R: Human thrombin complexed with D-Phe-Pro-D-Arg-Ile

PDB ID: 3U8RDownload
MMDB ID: 99842
PDB Deposition Date: 2011/10/17
Updated in MMDB: 2018/07
Experimental Method:
x-ray diffraction
Resolution: 1.47  Å
Source Organism:
Similar Structures:
Biological Unit for 3U8R: trimeric; determined by author and by software (PISA)
Molecular Components in 3U8R
Label Count Molecule
Proteins (2 molecules)
1
Thrombin Light Chain
(Gene symbol: F2)
Molecule annotation
1
Thrombin Heavy Chain
(Gene symbol: F2)
Molecule annotation
Chemicals and Non-standard biopolymers (7 molecules)
I
1
D-Phe-Pro-D-Arg-Ile DERIVED DIRECT THROMBIN INHIBITOR
1
1
N-ACETYL-D-GLUCOSAMINEN-ACETYL-D-GLUCOSAMINE
2
1
SODIUM IONSODIUM ION
3
1
IODIDE IONIODIDE ION
4
1
CHLORIDE IONCHLORIDE ION
5
1
(4S)-2-METHYL-2,4-PENTANEDIOL(4S)-2-METHYL-2,4-PENTANEDIOL
6
1
(4R)-2-METHYLPENTANE-2,4-DIOL(4R)-2-METHYLPENTANE-2,4-DIOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303