3T9E: Crystal structure of the catalytic domain of human diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2) in complex with ADP, 5-(PP)-IP5 (5-IP7) and MgF3 (transition state mimic)

PDB ID: 3T9EDownload
MMDB ID: 95555
PDB Deposition Date: 2011/8/2
Updated in MMDB: 2011/12
Experimental Method:
x-ray diffraction
Resolution: 1.9  Å
Source Organism:
Similar Structures:
Biological Unit for 3T9E: monomeric; determined by author and by software (PISA)
Molecular Components in 3T9E
Label Count Molecule
Protein (1 molecule)
1
Inositol Pyrophosphate Kinase
(Gene symbol: PPIP5K2)
Molecule annotation
Chemicals and Non-standard biopolymers (8 molecules)
1
1
ADENOSINE-5'-DIPHOSPHATEADENOSINE-5'-DIPHOSPHATE
2
1
(1r,2R,3S,4s,5R,6S)-2,3,4,5,6-pentakis(phosphonooxy)cyclohexyl trihydrogen diphosphate(1r,2R,3S,4s,5R,6S)-2,3,4,5,6-pentakis(phosphonooxy)cyclohexyl trihydrogen diphosphate
3
5
MAGNESIUM IONMAGNESIUM ION
4
1
TRIFLUOROMAGNESATETRIFLUOROMAGNESATE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303