3SYZ: Crystal structure of the large fragment of DNA polymerase I from Thermus Aquaticus in an open binary complex with dNaM as templating nucleobase

PDB ID: 3SYZDownload
MMDB ID: 100272
PDB Deposition Date: 2011/7/18
Updated in MMDB: 2023/09
Experimental Method:
x-ray diffraction
Resolution: 1.952  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 3SYZ: trimeric; determined by author and by software (PISA)
Molecular Components in 3SYZ
Label Count Molecule
Protein (1 molecule)
1
DNA Polymerase I, Thermostable
Molecule annotation
Nucleotides(2 molecules)
1
(5'-d(*gp*ap*cp*cp*ap*cp*gp*gp*cp*gp*cp*(doc))-3')
Molecule annotation
1
(5'-d(*ap*ap*ap*(bmn)p*gp*gp*cp*gp*cp*cp*gp*tp*gp*gp*tp*c)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (18 molecules)
1
6
FORMIC ACIDFORMIC ACID
2
10
GLYCEROLGLYCEROL
3
2
MAGNESIUM IONMAGNESIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303