3SP6: Structural Basis For Iloprost As A Dual Pparalpha/delta Agonist

Iloprost is a prostacyclin analog that has been used to treat many vascular conditions. Peroxisome proliferator-activated receptors (PPARs) are ligand-regulated transcription factors with various important biological effects such as metabolic and cardiovascular physiology. Here, we report the crystal structures of the PPARalpha ligand-binding domain and PPARdelta ligand-binding domain bound to iloprost, thus providing unambiguous evidence for the direct interaction between iloprost and PPARs and a structural basis for the recognition of PPARalpha/delta by this prostacyclin analog. In addition to conserved contacts for all PPARalpha ligands, iloprost also initiates several specific interactions with PPARs using its unique structural groups. Structural and functional studies of receptor-ligand interactions reveal strong functional correlations of the iloprost-PPARalpha/delta interactions as well as the molecular basis of PPAR subtype selectivity toward iloprost ligand. As such, the structural mechanism may provide a more rational template for designing novel compounds targeting PPARs with more favorable pharmacologic impact based on existing iloprost drugs.
PDB ID: 3SP6Download
MMDB ID: 92241
PDB Deposition Date: 2011/7/1
Updated in MMDB: 2011/07
Experimental Method:
x-ray diffraction
Resolution: 2.21  Å
Source Organism:
Similar Structures:
Biological Unit for 3SP6: dimeric; determined by author and by software (PISA)
Molecular Components in 3SP6
Label Count Molecule
Proteins (2 molecules)
Peroxisome Proliferator-activated Receptor Alpha(Gene symbol: PPARA)
Molecule annotation
Peroxisome Proliferator-activated Receptor Gamma Coactivator 1-beta(Gene symbol: PPARGC1B)
Molecule annotation
Chemical (1 molecule)
* Click molecule labels to explore molecular sequence information.

Citing MMDB