3SE9: Crystal structure of broadly and potently neutralizing antibody VRC-PG04 in complex with HIV-1 gp120

PDB ID: 3SE9Download
MMDB ID: 92611
PDB Deposition Date: 2011/6/10
Updated in MMDB: 2021/10
Experimental Method:
x-ray diffraction
Resolution: 2  Å
Source Organism:
Human immunodeficiency virus 1▼
Similar Structures:
Biological Unit for 3SE9: trimeric; determined by author
Molecular Components in 3SE9
Label Count Molecule
Proteins (3 molecules)
1
Hiv-1 Clade AE Strain 93th057 Gp120
Molecule annotation
1
Heavy Chain of Antibody Vrc-pg04
Molecule annotation
1
Light Chain of Antibody Vrc-pg04
Molecule annotation
Chemicals and Non-standard biopolymers (39 molecules)
1
10
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
5
SULFATE IONSULFATE ION
3
4
GLYCEROLGLYCEROL
4
18
CHLORIDE IONCHLORIDE ION
5
1
(R,R)-2,3-BUTANEDIOL(R,R)-2,3-BUTANEDIOL
6
1
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303