3S4P: Crystal structure of the bacterial ribosomal decoding site complexed with an amphiphilic paromomycin O2''-ether analogue

PDB ID: 3S4PDownload
MMDB ID: 93737
PDB Deposition Date: 2011/5/20
Updated in MMDB: 2023/11
Experimental Method:
x-ray diffraction
Resolution: 2.56  Å
Source Organism:
Biological Unit for 3S4P: dimeric; determined by author and by software (PISA)
Molecular Components in 3S4P
Label Count Molecule
Nucleotides(2 molecules)
2
RNA (5'-r(p*gp*cp*gp*up*cp*ap*cp*ap*cp*cp*gp*gp*up*gp*ap*ap*gp*up*cp*gp*c)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (2 molecules)
1
2
(1R,2R,3S,4R,6S)-4,6-diamino-2-{[3-O-(2,6-diamino-2,6-dideoxy-beta-L-idopyranosyl)-2-O-{2-[(2-phenylethyl)amino]ethyl}-beta-D-ribofuranosyl]oxy}-3-hydroxycyclohexyl 2-amino-2-deoxy-alpha-D-glucopyranoside(1R,2R,3S,4R,6S)-4,6-diamino-2-{[3-O-(2,6-diamino-2,6-dideoxy-beta-L-idopyranosyl)-2-O-{2-[(2-phenylethyl)amino]ethyl}-beta-D-ribofuranosyl]oxy}-3-hydroxycyclohexyl 2-amino-2-deoxy-alpha-D-glucopyranoside
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303