3RZC: Structure of the self-antigen iGb3 bound to mouse CD1d and in complex with the iNKT TCR

PDB ID: 3RZCDownload
MMDB ID: 92936
PDB Deposition Date: 2011/5/11
Updated in MMDB: 2024/12
Experimental Method:
x-ray diffraction
Resolution: 2.8  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 3RZC: tetrameric; determined by author
Molecular Components in 3RZC
Label Count Molecule
Proteins (4 molecules)
1
Antigen-presenting Glycoprotein Cd1d1
Molecule annotation
1
Beta-2-microglobulin
Molecule annotation
1
Valpha14
Molecule annotation
1
Vbeta8.2
Molecule annotation
Chemicals and Non-standard biopolymers (9 molecules)
1
6
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
1
alpha-D-mannopyranosealpha-D-mannopyranose
3
1
beta-L-fucopyranosebeta-L-fucopyranose
4
1
N-[(2S,3R,4E)-1-{[alpha-D-galactopyranosyl-(1->3)-beta-D-galactopyranosyl-(1->4)-beta-D-glucopyranosyl]oxy}-3-hydroxyoctadec-4-en-2-yl]hexacosanamideN-[(2S,3R,4E)-1-{[alpha-D-galactopyranosyl-(1->3)-beta-D-galactopyranosyl-(1->4)-beta-D-glucopyranosyl]oxy}-3-hydroxyoctadec-4-en-2-yl]hexacosanamide
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303