3RUN: New strategy to analyze structures of glycopeptide antibiotic-target complexes

PDB ID: 3RUNDownload
MMDB ID: 100236
PDB Deposition Date: 2011/5/5
Updated in MMDB: 2023/12
Experimental Method:
x-ray diffraction
Resolution: 1.4  Å
Source Organism:
Similar Structures:
Biological Unit for 3RUN: dimeric; determined by author
Molecular Components in 3RUN
Label Count Molecule
Protein (1 molecule)
1
Lysozyme
(Gene symbol: e)
Molecule annotation
Chemicals and Non-standard biopolymers (11 molecules)
B
1
VANCOMYCIN
1
1
beta-D-glucopyranosebeta-D-glucopyranose
2
1
vancosaminevancosamine
3
1
(4S)-2-METHYL-2,4-PENTANEDIOL(4S)-2-METHYL-2,4-PENTANEDIOL
4
2
(4R)-2-METHYLPENTANE-2,4-DIOL(4R)-2-METHYLPENTANE-2,4-DIOL
5
1
PHOSPHATE IONPHOSPHATE ION
6
1
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
7
1
CHLORIDE IONCHLORIDE ION
8
2
ISOPROPYL ALCOHOLISOPROPYL ALCOHOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303