3R0R: The 2.3 A Structure Of Porcine Circovirus 2

Porcine circovirus 2 (PCV2) is a T=1 nonenveloped icosahedral virus that has had severe impact on the swine industry. Here we report the crystal structure of an N-terminally truncated PCV2 virus-like particle at 2.3-A resolution, and the cryo-electron microscopy (cryo-EM) image reconstruction of a full-length PCV2 virus-like particle at 9.6-A resolution. This is the first atomic structure of a circovirus. The crystal structure revealed that the capsid protein fold is a canonical viral jelly roll. The loops connecting the strands of the jelly roll define the limited features of the surface. Sulfate ions interacting with the surface and electrostatic potential calculations strongly suggest a heparan sulfate binding site that allows PCV2 to gain entry into the cell. The crystal structure also allowed previously determined epitopes of the capsid to be visualized. The cryo-EM image reconstruction showed that the location of the N terminus, absent in the crystal structure, is inside the capsid. As the N terminus was previously shown to be antigenic, it may externalize through viral "breathing."
PDB ID: 3R0RDownload
MMDB ID: 91916
PDB Deposition Date: 2011/3/8
Updated in MMDB: 2014/11
Experimental Method:
x-ray diffraction
Resolution: 2.35  Å
Source Organism:
Similar Structures:
Biological Unit for 3R0R: 60-meric
Molecular Components in 3R0R
Label Count Molecule
Proteins (60 molecules)
Porcine Circovirus 2 (Pcv2) Capsid Protein
Molecule annotation
Chemicals (238 molecules)
* Click molecule labels to explore molecular sequence information.

Citing MMDB