3QXX: Crystal structure of dethiobiotin synthetase (BioD) from Helicobacter pylori complexed with GDP and 8-aminocaprylic acid

PDB ID: 3QXXDownload
MMDB ID: 89587
PDB Deposition Date: 2011/3/2
Updated in MMDB: 2023/09
Experimental Method:
x-ray diffraction
Resolution: 1.36  Å
Source Organism:
Similar Structures:
Biological Unit for 3QXX: dimeric; determined by author and by software (PISA)
Molecular Components in 3QXX
Label Count Molecule
Proteins (2 molecules)
2
Dethiobiotin Synthetase
(Gene symbol: HP0029)
Molecule annotation
Chemicals and Non-standard biopolymers (24 molecules)
1
2
8-aminooctanoic acid8-aminooctanoic acid
2
2
GUANOSINE-5'-DIPHOSPHATEGUANOSINE-5'-DIPHOSPHATE
3
4
MAGNESIUM IONMAGNESIUM ION
4
2
PHOSPHATE IONPHOSPHATE ION
5
12
1,2-ETHANEDIOL1,2-ETHANEDIOL
6
2
GLYCEROLGLYCEROL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303